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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G119500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 178aa MW: 19145.2 Da PI: 11.2381 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.5e-10 | 84 | 127 | 2 | 45 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L Sevir.5G119500.1.p 84 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAEL 127 78899***********************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.0E-13 | 83 | 147 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.1E-10 | 84 | 145 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.162 | 85 | 148 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.13E-12 | 88 | 145 | No hit | No description |
CDD | cd14704 | 2.63E-15 | 88 | 138 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-16 | 88 | 147 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 90 | 105 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG RCRAHASTFR PKEDGKQGQL 60 VVAAGAQGQP LAAGKKRGRT AGDKEQNRLK RLLRNRVSAQ QARERKKAYL TELEAKAKDL 120 ELRNAELEQR VSTLQNENNT LRQILKNTTA HASKRSSGGG AGGKGGDGGK KHHFTKS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT017937 | 1e-133 | BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence. | |||
GenBank | EU958008 | 1e-133 | EU958008.1 Zea mays clone 1640173 transcription factor HY5 mRNA, complete cds. | |||
GenBank | EU976642 | 1e-133 | EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968380.1 | 7e-74 | PREDICTED: transcription factor HY5-like | ||||
Swissprot | Q9SM50 | 6e-36 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | K3XM66 | 8e-74 | K3XM66_SETIT; Uncharacterized protein | ||||
STRING | Si002989m | 2e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 7e-32 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G119500.1.p |