PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G119500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 178aa    MW: 19145.2 Da    PI: 11.2381
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G119500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.5e-1084127245
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         ke  r +r+ +NR++A+  R+RKka++ eLe k+k Le  N +L
  Sevir.5G119500.1.p  84 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAEL 127
                         78899***********************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.0E-1383147IPR004827Basic-leucine zipper domain
PfamPF001702.1E-1084145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.16285148IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-1288145No hitNo description
CDDcd147042.63E-1588138No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-1688147No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG RCRAHASTFR PKEDGKQGQL  60
VVAAGAQGQP LAAGKKRGRT AGDKEQNRLK RLLRNRVSAQ QARERKKAYL TELEAKAKDL  120
ELRNAELEQR VSTLQNENNT LRQILKNTTA HASKRSSGGG AGGKGGDGGK KHHFTKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0179371e-133BT017937.1 Zea mays clone EL01N0520G04.c mRNA sequence.
GenBankEU9580081e-133EU958008.1 Zea mays clone 1640173 transcription factor HY5 mRNA, complete cds.
GenBankEU9766421e-133EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968380.17e-74PREDICTED: transcription factor HY5-like
SwissprotQ9SM506e-36HY5_SOLLC; Transcription factor HY5
TrEMBLK3XM668e-74K3XM66_SETIT; Uncharacterized protein
STRINGSi002989m2e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.17e-32bZIP family protein